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I will cite the FAQ from . First for perplexity: How should I set the perplexity in t-SNE? The performance of t-SNE is fairly robust under different settings of the perplexity. The most appropriate value depends on the density of your data. Loosely speaking one could say that a larger / denser dataset requires a larger perplexity. Typical values for the perplexity range between 5 and 50. For ...
https://stats.stackexchange.com/questions/222912/how-to-determine-parameters-for-t-sne-for-reducing-dimensions
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